Glyma01g32680 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g32680

Feature Type:	gene_model
Chromosome:	Gm01
Start:	44207947
stop:	44213690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g32680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01850	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:332829-334180 FORWARD LENGTH=333	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF140	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7KX34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase, putative n=1 Tax=Medicago truncatula RepID=G7KX34_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023376D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023376D0 related cluster n=2 Tax=unknown RepID=UPI00023376D0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g32680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g32680

Paralog	Evidence	Comments
Glyma03g04410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g32680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g132300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g32680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g32680

Limit To All Plant Sequences

>Glyma01g32680.3   sequence type=transcript   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGATACACTTTGAAGTTGAACCCTCTCTCGTCGGAAGAAAGAAGGAACATGTCCTCTTCGGAGAGAGAAAGTGAAAAACGAAAACGACCCCGTTTTAGATAGAGAAAGTAAACTAAAAAAAATTGCTGCTTACTTTTTTTTTCCTACTTTTTTATGCTGGTTTTGGTGACTTGGGGTGGTTTAGAAGAGTTTTAAAAACATAAACTGGGAGGCGAAATTTTGTGGGGTGTGTGTCAATTTTCTCAGGAAATTTTGTTTGCGTCTGTTGTAAGTTACTTTCTTCTTCTTTTTTTTTTTCTTTCCTCATTTTTTTTAAAAAAATTGTTTGATGGGTTTCTTTGGATGAACTTCAAACGGTGGCCAGCTTCTCAATGAAGCAAAGGTTTGAAAGAGGGGAACATGCTACATGGGTATTGAAATGAGGGACTTGGTTATAGTTTAAGGGTGCAGCATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGTGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTGTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAACTGTGAGAGTTGGAAATTTTTTTAAAAAATTCCTTTTGCTGTAAATAAAAGAGTTCTCATAGCAGCTTTTACAAGTAATCATTTAAGGTGTAGAATGATGTTGATAAACTTTTTGAAAGAGTAAGGAAATAGAAAGGTTTGTTTATATTATGCACTTGAGCTTGTTGTGTAAGAACAAGTTGGTTTAGATATTTGCCTCCATTCTAAGACATGTTTTTAATTACTGTGAAGCATTTCATTGTATATAGTAGTTGTATCCAAGGAGTGTTCATTAATTTGTTTGTGTTAATTGACTGAATGTCAATTTTAAAACTTATATGATTATAGTATATATGATGATGATGCACGTTGCTTCTTTGATTTGGATGTTACTGGTTTATTAAGTATACTAGAGTTTTAAGGAACATTAGTCTTTTGCAATTTTA

>Glyma01g32680.4   sequence type=transcript   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGATACACTTTGAAGTTGAACCCTCTCTCGTCGGAAGAAAGAAGGAACATGTCCTCTTCGGAGAGAGAAAGTGAAAAACGAAAACGACCCCGTTTTAGATAGAGAAAGTAAACTAAAAAAAATTGCTGCTTACTTTTTTTTTCCTACTTTTTTATGCTGGTTTTGGTGACTTGGGGTGGTTTAGAAGAGTTTTAAAAACATAAACTGGGAGGCGAAATTTTGTGGGGTGTGTGTCAATTTTCTCAGGAAATTTTGTTTGCGTCTGTTGTATTGAAATGAGGGACTTGGTTATAGTTTAAGGGTGCAGCATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGTGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTGTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAACTGTGAGAGTTGGAAATTTTTTTAAAAAATTCCTTTTGCTGTAAATAAAAGAGTTCTCATAGCAGCTTTTACAAGTAATCATTTAAGGTGTAGAATGATGTTGATAAACTTTTTGAAAGAGTAAGGAAATAGAAAGGTTTGTTTATATTATGCACTTGAGCTTGTTGTGTAAGAACAAGTTGGTTTAGATATTTGCCTCCATTCTAAGACATGTTTTTAATTACTGTGAAGCATTTCATTGTATATAGTAGTTGTATCCAAGGAGTGTTCATTAATTTGTTTGTGTTAATTGACTGAATGTCAATTTTAAAACTTATATGATTATAGTATATATGATGATGATGCACGTTGCTTCTTTGATTTGGATGTTACTGGTTTATTAAGTATACTAGAGTTTTAAGGAACATTAGTCTTTTGCAATTTTA

Coding sequences of Glyma01g32680

Limit To All Plant Sequences

>Glyma01g32680.2   sequence type=CDS   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGTGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTGTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAA

>Glyma01g32680.3   sequence type=CDS   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGTGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTGTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAA

>Glyma01g32680.4   sequence type=CDS   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTACAGAGAAAGAAACAAAGGGAAAGGAGAAGAGAAGGAATATGAGAACAGTACTACTAGAGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGGGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCAGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACTTTGGAAGAAAGAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTCATGGTGATTGTTACAGAGATGTTACCCGGGTTGTCGCTGCGAAAATATCTGACCACCATACGCCCTAAACAATTGGACCCTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCGAGCCATGGATTGGTTACATGCCAACGGAATCATACACAGAGATCTGAAACCCGACAATCTGCTGCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTATACAGTACTGTGACATTGTGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTGTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGAATGTCGAATTTGCAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATATCTCCTGACCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTCAATGAGTTTCACTTTACACTCCAACAACCATCCCCTTCAATGCCGCTAGAACCTGAGAACGAACCTGAGGCTATAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAAGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAA

Predicted protein sequences of Glyma01g32680

Limit To All Plant Sequences

>Glyma01g32680.2   sequence type=predicted peptide   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYRERNKGKGEEKEYENSTTRGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDQIVAIKVLHRGGTLEERVALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLCQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFHFTLQQPSPSMPLEPENEPEAITSNGTITDFSTRNKVKFSFIRHLFSSKRTKS*

>Glyma01g32680.3   sequence type=predicted peptide   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYRERNKGKGEEKEYENSTTRGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDQIVAIKVLHRGGTLEERVALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLCQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFHFTLQQPSPSMPLEPENEPEAITSNGTITDFSTRNKVKFSFIRHLFSSKRTKS*

>Glyma01g32680.4   sequence type=predicted peptide   gene model=Glyma01g32680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYRERNKGKGEEKEYENSTTRGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDQIVAIKVLHRGGTLEERVALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLCQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFHFTLQQPSPSMPLEPENEPEAITSNGTITDFSTRNKVKFSFIRHLFSSKRTKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain